Key Features for Seamless Proteomics Workflow
Data QC & Preprocessing
Automated filtering (>50% missing values), normalization (median/total intensity), and BPCA imputation. Visualize with barplots, boxplots, density plots, and PCA.
Batch Effect Correction
Parallelized ComBat for multi-instrument, multi-gradient data. Iterative refinement with editable annotations. Corrects longitudinal drifts and cross-lab variations.
Differential Expression Analysis
Identify DEPs with volcano plots, heatmaps, and PCA. Supports ANOVA, t-tests, and clustering for top DEPs.
Pathway & Network Analysis
Integrated ORA/GSEA (Reactome, WikiPathways) and STRING PPI networks. Visualize enriched pathways and functional modules.
Targeted Exploration
Search specific proteins with heatmaps and stats. Scalable for large datasets from public repositories like PRIDE.
